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Move species count to analysis

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Elias Projahn 2021-11-17 22:57:31 +01:00
parent f84d37dd30
commit 33056bfa40
6 changed files with 30 additions and 45 deletions
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5
man/ranking.Rd
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@ -4,16 +4,13 @@
\alias{ranking}
\title{Rank the results by computing a score.}
\usage{
ranking(analysis, weights, min_n_species = 10)
ranking(analysis, weights)
}
\arguments{
\item{analysis}{Analysis object resulting from \code{\link[=analyze]{analyze()}}.}
\item{weights}{Named list pairing method names with weighting factors. Only
methods that are contained within this list will be included.}
\item{min_n_species}{Minimum number of required species per gene. Genes that
have fewer species will not be included in the ranking.}
}
\value{
A ranking object. The object extends the analysis result with