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adjacency: Make distance estimation customizable

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This commit is contained in:
Elias Projahn 2022-01-09 20:21:27 +01:00
parent ac9894e988
commit 2ceda0691b
4 changed files with 109 additions and 71 deletions
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10
man/adjacency.Rd
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@ -4,13 +4,15 @@
\alias{adjacency}
\title{Score genes based on their proximity to the reference genes.}
\usage{
adjacency()
adjacency(estimate = densest)
}
\arguments{
\item{estimate}{A function that will be used to summarize the distance
values for each gene. See \code{\link[=densest]{densest()}} for the default implementation.}
}
\value{
An object of class \code{geposan_method}.
}
\description{
This method finds the distance value with the maximum density for each gene
(i.e. the mode of its estimated distribution). Genes are scored by comparing
those distance values with the values of the reference genes.
Score genes based on their proximity to the reference genes.
}