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Properly access distance data

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This commit is contained in:
Elias Projahn 2021-10-21 14:26:03 +02:00
parent c0a1d965d7
commit 21a5817988
5 changed files with 12 additions and 18 deletions
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4
R/proximity.R
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@ -2,9 +2,9 @@
#
# A score will be given to each gene such that 0.0 corresponds to the maximal
# mean distance across all genes and 1.0 corresponds to a distance of 0.
proximity <- function(distances, preset, progress = NULL) {
proximity <- function(preset, progress = NULL) {
# Prefilter distances by species and gene.
distances <- distances[
distances <- geposan::distances[
species %chin% preset$species_ids & gene %chin% preset$gene_ids
]