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Update data to Ensembl version 105

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Elias Projahn 2022-01-03 17:49:45 +01:00
parent 2e27fbb95c
commit 1ec352b1d9
4 changed files with 2 additions and 3 deletions
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data/distances.rda
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data/genes.rda
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data/species.rda
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scripts/ensembl.R
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@ -2,9 +2,8 @@ library(data.table)
rlog::log_info("Connecting to Ensembl API") rlog::log_info("Connecting to Ensembl API")
# Object to access the Ensembl API. We use the US east mirror to circumvent # Object to access the Ensembl API.
# current issues with the main server being temporarily unreliable. ensembl <- biomaRt::useEnsembl("ensembl", version = 105)
ensembl <- biomaRt::useEnsembl("ensembl", host = "useast.ensembl.org")
# Retrieve species information. # Retrieve species information.