2021-12-16 13:01:44 +01:00
|
|
|
% Generated by roxygen2: do not edit by hand
|
2022-01-26 09:58:33 +01:00
|
|
|
% Please edit documentation in R/method_correlation.R
|
2021-12-16 13:01:44 +01:00
|
|
|
\name{correlation}
|
|
|
|
|
\alias{correlation}
|
2022-01-09 21:32:37 +01:00
|
|
|
\title{Score genes based on their correlation with the reference genes.}
|
2021-12-16 13:01:44 +01:00
|
|
|
\usage{
|
2022-06-22 11:20:39 +02:00
|
|
|
correlation(
|
|
|
|
|
id = "correlation",
|
|
|
|
|
name = "Correlation",
|
|
|
|
|
description = "Correlation with reference genes",
|
|
|
|
|
summarize = stats::median
|
|
|
|
|
)
|
2022-02-24 14:34:18 +01:00
|
|
|
}
|
|
|
|
|
\arguments{
|
2022-06-22 11:20:39 +02:00
|
|
|
\item{id}{Unique ID for the method and its results.}
|
|
|
|
|
|
|
|
|
|
\item{name}{Human readable name for the method.}
|
|
|
|
|
|
|
|
|
|
\item{description}{Method description.}
|
|
|
|
|
|
2022-02-24 14:34:18 +01:00
|
|
|
\item{summarize}{A function for combining the different correlation
|
|
|
|
|
coefficients into one metric. By default, \code{\link[stats:median]{stats::median()}} is used. Other
|
|
|
|
|
suggested options include \code{\link[=max]{max()}} and \code{\link[=mean]{mean()}}.}
|
2021-12-16 13:01:44 +01:00
|
|
|
}
|
|
|
|
|
\value{
|
|
|
|
|
An object of class \code{geposan_method}.
|
|
|
|
|
}
|
|
|
|
|
\description{
|
2022-01-09 21:32:37 +01:00
|
|
|
Score genes based on their correlation with the reference genes.
|
2021-12-16 13:01:44 +01:00
|
|
|
}
|