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										 |  |  | % Generated by roxygen2: do not edit by hand | 
					
						
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										 |  |  | % Please edit documentation in R/method_correlation.R | 
					
						
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										 |  |  | \name{correlation} | 
					
						
							|  |  |  | \alias{correlation} | 
					
						
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										 |  |  | \title{Score genes based on their correlation with the reference genes.} | 
					
						
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										 |  |  | \usage{ | 
					
						
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										 |  |  | correlation( | 
					
						
							|  |  |  |   id = "correlation", | 
					
						
							|  |  |  |   name = "Correlation", | 
					
						
							|  |  |  |   description = "Correlation with reference genes", | 
					
						
							|  |  |  |   summarize = stats::median | 
					
						
							|  |  |  | ) | 
					
						
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										 |  |  | } | 
					
						
							|  |  |  | \arguments{ | 
					
						
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										 |  |  | \item{id}{Unique ID for the method and its results.} | 
					
						
							|  |  |  | 
 | 
					
						
							|  |  |  | \item{name}{Human readable name for the method.} | 
					
						
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 | 
					
						
							|  |  |  | \item{description}{Method description.} | 
					
						
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 | 
					
						
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										 |  |  | \item{summarize}{A function for combining the different correlation | 
					
						
							|  |  |  | coefficients into one metric. By default, \code{\link[stats:median]{stats::median()}} is used. Other | 
					
						
							|  |  |  | suggested options include \code{\link[=max]{max()}} and \code{\link[=mean]{mean()}}.} | 
					
						
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										 |  |  | } | 
					
						
							|  |  |  | \value{ | 
					
						
							|  |  |  | An object of class \code{geposan_method}. | 
					
						
							|  |  |  | } | 
					
						
							|  |  |  | \description{ | 
					
						
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										 |  |  | Score genes based on their correlation with the reference genes. | 
					
						
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										 |  |  | } |